An R-based bioinformatic pipeline to determine killer-cell immunoglobulin-like receptor (KIR) copy number and high-resolution genotypes from short-read sequencing data.
I just realized I can't make a pull request onto a new branch, so this is onto the docker_copyOnly branch. The README on this branch has pretty extensive instructions on how to run PING via snakemake. It may be useful at some point to break up some of the steps in PING_run into their own steps in snakemake, but I think this is a good start.
I just realized I can't make a pull request onto a new branch, so this is onto the docker_copyOnly branch. The README on this branch has pretty extensive instructions on how to run PING via snakemake. It may be useful at some point to break up some of the steps in
PING_runinto their own steps in snakemake, but I think this is a good start.