Get the png image from roi file

Holliemin9090 / Mammographic-mass-CAD-via-pseudo-color-mammogram-and-Mask-R-CNN

Fully automatic computer-aided mass detection and segmentation via pseudo-color mammograms and Mask R-CNN

http://arxiv.org/abs/1906.12118

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Get the png image from roi file #1

Closed cao1124 closed 4 years ago

cao1124 commented 5 years ago

How did you get the input png image for preprocessing through the roi file？I download OsiriX Lite software，which can display dcm images and roi annotations on it，but I cannot convert the roi file to a mask png image.

Look forward to your reply.

Holliemin9090 commented 4 years ago

Sorry for the late reply. We actually received the data already in PNG format from a collaborator. But I think the image and annotation data can be opened and saved into another format in MATLAB and Python. I found this webpage which might turn out to be helpful to you. https://www.researchgate.net/post/How_do_I_use_contour_points_in_INBreast_database

cao1124 commented 4 years ago

Sorry for the late reply. We actually received the data already in PNG format from a collaborator. But I think the image and annotation data can be opened and saved into another format in MATLAB and Python. I found this webpage which might turn out to be helpful to you. https://www.researchgate.net/post/How_do_I_use_contour_points_in_INBreast_database

cao1124 commented 4 years ago

very thanks for your reply, I have another question, how do you handle the detection of discrete、tiny calcification points in your project？

Holliemin9090 commented 4 years ago

This application is designed for breast mass detection. It does not detect calcifications at this stage unfortunately...