HDF5 formula does not install hdf5.pc

[FFroehlich]

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  brew config
  HOMEBREW_VERSION: 1.6.7
  ORIGIN: https://github.com/Homebrew/brew.git
  HEAD: 22e9fd772926e389e264cfb328c3d810b06759f9
  Last commit: 4 days ago
  Core tap ORIGIN: https://github.com/Homebrew/homebrew-core
  Core tap HEAD: 512758e6eb0785043a7fc6c40fb49d8023fe91e3
  Core tap last commit: 45 minutes ago
  HOMEBREW_PREFIX: /usr/local
  CPU: quad-core 64-bit ivybridge
  Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3_2/bin/ruby
  Clang: 9.1 build 902
  Git: 2.17.0 => /usr/local/bin/git
  Curl: 7.54.0 => /usr/bin/curl
  Java: 1.8.0_112
  macOS: 10.13.3-x86_64
  CLT: 9.3.0.0.1.1521514116
  Xcode: 9.3.1
  XQuartz: 2.7.11 => /opt/X11

brew doctor
Warning: A newer Command Line Tools release is available.
Update them from Software Update in the App Store.

Warning: Unbrewed dylibs were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected dylibs:
  /usr/local/lib/libmuparser.2.2.4.dylib
  /usr/local/lib/libnuml.1.0.1.dylib
  /usr/local/lib/libsbml.5.13.0.dylib
  /usr/local/lib/libsbml.5.15.0.dylib
  /usr/local/lib/libsedml.0.4.2.dylib
  /usr/local/lib/libtcl8.6.dylib
  /usr/local/lib/libtk8.6.dylib
  /usr/local/lib/libzmq.3.dylib

Warning: Unbrewed header files were found in /usr/local/include.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected header files:
  /usr/local/include/cvode/cvode.h
  /usr/local/include/cvode/cvode_band.h
  /usr/local/include/cvode/cvode_bandpre.h
  /usr/local/include/cvode/cvode_bbdpre.h
  /usr/local/include/cvode/cvode_dense.h
  /usr/local/include/cvode/cvode_diag.h
  /usr/local/include/cvode/cvode_direct.h
  /usr/local/include/cvode/cvode_impl.h
  /usr/local/include/cvode/cvode_spbcgs.h
  /usr/local/include/cvode/cvode_spgmr.h
  /usr/local/include/cvode/cvode_spils.h
  /usr/local/include/cvode/cvode_sptfqmr.h
  /usr/local/include/cvodes/cvodes.h
  /usr/local/include/cvodes/cvodes_band.h
  /usr/local/include/cvodes/cvodes_bandpre.h
  /usr/local/include/cvodes/cvodes_bbdpre.h
  /usr/local/include/cvodes/cvodes_dense.h
  /usr/local/include/cvodes/cvodes_diag.h
  /usr/local/include/cvodes/cvodes_direct.h
  /usr/local/include/cvodes/cvodes_impl.h
  /usr/local/include/cvodes/cvodes_spbcgs.h
  /usr/local/include/cvodes/cvodes_spgmr.h
  /usr/local/include/cvodes/cvodes_spils.h
  /usr/local/include/cvodes/cvodes_sptfqmr.h
  /usr/local/include/fakemysql.h
  /usr/local/include/fakepq.h
  /usr/local/include/fakesql.h
  /usr/local/include/ida/ida.h
  /usr/local/include/ida/ida_band.h
  /usr/local/include/ida/ida_bbdpre.h
  /usr/local/include/ida/ida_dense.h
  /usr/local/include/ida/ida_direct.h
  /usr/local/include/ida/ida_impl.h
  /usr/local/include/ida/ida_spbcgs.h
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  /usr/local/include/ida/ida_spils.h
  /usr/local/include/ida/ida_sptfqmr.h
  /usr/local/include/idas/idas.h
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  /usr/local/include/idas/idas_bbdpre.h
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  /usr/local/include/idas/idas_impl.h
  /usr/local/include/idas/idas_spbcgs.h
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  /usr/local/include/idas/idas_spils.h
  /usr/local/include/idas/idas_sptfqmr.h
  /usr/local/include/itcl.h
  /usr/local/include/itcl2TclOO.h
  /usr/local/include/itclDecls.h
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  /usr/local/include/itclIntDecls.h
  /usr/local/include/itclMigrate2TclCore.h
  /usr/local/include/itclTclIntStubsFcn.h
  /usr/local/include/kinsol/kinsol.h
  /usr/local/include/kinsol/kinsol_band.h
  /usr/local/include/kinsol/kinsol_bbdpre.h
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  /usr/local/include/kinsol/kinsol_impl.h
  /usr/local/include/kinsol/kinsol_spbcgs.h
  /usr/local/include/kinsol/kinsol_spgmr.h
  /usr/local/include/kinsol/kinsol_spils.h
  /usr/local/include/kinsol/kinsol_sptfqmr.h
  /usr/local/include/muParser.h
  /usr/local/include/muParserBase.h
  /usr/local/include/muParserBytecode.h
  /usr/local/include/muParserCallback.h
  /usr/local/include/muParserDLL.h
  /usr/local/include/muParserDef.h
  /usr/local/include/muParserError.h
  /usr/local/include/muParserFixes.h
  /usr/local/include/muParserInt.h
  /usr/local/include/muParserStack.h
  /usr/local/include/muParserTemplateMagic.h
  /usr/local/include/muParserTest.h
  /usr/local/include/muParserToken.h
  /usr/local/include/muParserTokenReader.h
  /usr/local/include/mysqlStubs.h
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  /usr/local/include/numl/common/libnuml-config.h
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  /usr/local/include/numl/common/libnuml-package.h
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  /usr/local/include/numl/common/numlfwd.h
  /usr/local/include/numl/common/operationReturnValues.h
  /usr/local/include/nvector/nvector_serial.h
  /usr/local/include/odbcStubs.h
  /usr/local/include/pqStubs.h
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  /usr/local/include/sbml/AssignmentRule.h
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  /usr/local/include/sbml/SBMLTypes.h
  /usr/local/include/sbml/SBMLVisitor.h
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  /usr/local/include/sbml/SBase.h
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  /usr/local/include/sbml/SpeciesType.h
  /usr/local/include/sbml/StoichiometryMath.h
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  /usr/local/include/sbml/Trigger.h
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  /usr/local/include/sbml/UnitKind.h
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  /usr/local/include/sbml/packages/groups/validator/GroupsConsistencyValidator.h
  /usr/local/include/sbml/packages/groups/validator/GroupsIdentifierConsistencyValidator.h
  /usr/local/include/sbml/packages/groups/validator/GroupsSBMLError.h
  /usr/local/include/sbml/packages/groups/validator/GroupsSBMLErrorTable.h
  /usr/local/include/sbml/packages/groups/validator/GroupsValidator.h
  /usr/local/include/sbml/packages/groups/validator/constraints/GroupCircularReferences.h
  /usr/local/include/sbml/packages/groups/validator/constraints/GroupsUniqueModelWideIds.h
  /usr/local/include/sbml/packages/groups/validator/constraints/LOMembersConsistentReferences.h
  /usr/local/include/sbml/packages/layout/common/LayoutExtensionTypes.h
  /usr/local/include/sbml/packages/layout/common/layoutfwd.h
  /usr/local/include/sbml/packages/layout/extension/LayoutExtension.h
  /usr/local/include/sbml/packages/layout/extension/LayoutModelPlugin.h
  /usr/local/include/sbml/packages/layout/extension/LayoutSBMLDocumentPlugin.h
  /usr/local/include/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h
  /usr/local/include/sbml/packages/layout/sbml/BoundingBox.h
  /usr/local/include/sbml/packages/layout/sbml/CompartmentGlyph.h
  /usr/local/include/sbml/packages/layout/sbml/CubicBezier.h
  /usr/local/include/sbml/packages/layout/sbml/Curve.h
  /usr/local/include/sbml/packages/layout/sbml/Dimensions.h
  /usr/local/include/sbml/packages/layout/sbml/GeneralGlyph.h
  /usr/local/include/sbml/packages/layout/sbml/GraphicalObject.h
  /usr/local/include/sbml/packages/layout/sbml/Layout.h
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  /usr/local/include/sbml/packages/layout/util/LayoutAnnotation.h
  /usr/local/include/sbml/packages/layout/util/LayoutUtilities.h
  /usr/local/include/sbml/packages/layout/validator/LayoutConsistencyValidator.h
  /usr/local/include/sbml/packages/layout/validator/LayoutIdentifierConsistencyValidator.h
  /usr/local/include/sbml/packages/layout/validator/LayoutSBMLError.h
  /usr/local/include/sbml/packages/layout/validator/LayoutSBMLErrorTable.h
  /usr/local/include/sbml/packages/layout/validator/LayoutValidator.h
  /usr/local/include/sbml/packages/layout/validator/constraints/UniqueIdsLayout.h
  /usr/local/include/sbml/packages/multi/common/MultiExtensionTypes.h
  /usr/local/include/sbml/packages/multi/common/multifwd.h
  /usr/local/include/sbml/packages/multi/extension/MultiASTPlugin.h
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  /usr/local/include/sbml/packages/multi/extension/MultiExtension.h
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  /usr/local/include/sbml/packages/multi/extension/MultiModelPlugin.h
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  /usr/local/include/sbml/packages/multi/extension/MultiSimpleSpeciesReferencePlugin.h
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  /usr/local/include/sbml/packages/multi/sbml/BindingSiteSpeciesType.h
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  /usr/local/include/sbml/packages/multi/sbml/InSpeciesTypeBond.h
  /usr/local/include/sbml/packages/multi/sbml/IntraSpeciesReaction.h
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  /usr/local/include/sbml/packages/multi/sbml/OutwardBindingSite.h
  /usr/local/include/sbml/packages/multi/sbml/PossibleSpeciesFeatureValue.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesFeature.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesFeatureType.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesFeatureValue.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesTypeComponentIndex.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesTypeComponentMapInProduct.h
  /usr/local/include/sbml/packages/multi/sbml/SpeciesTypeInstance.h
  /usr/local/include/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h
  /usr/local/include/sbml/packages/multi/validator/MultiConsistencyValidator.h
  /usr/local/include/sbml/packages/multi/validator/MultiIdentifierConsistencyValidator.h
  /usr/local/include/sbml/packages/multi/validator/MultiMathMLConsistencyValidator.h
  /usr/local/include/sbml/packages/multi/validator/MultiSBMLError.h
  /usr/local/include/sbml/packages/multi/validator/MultiSBMLErrorTable.h
  /usr/local/include/sbml/packages/multi/validator/MultiValidator.h
  /usr/local/include/sbml/packages/multi/validator/constraints/MultiIdBase.h
  /usr/local/include/sbml/packages/multi/validator/constraints/MultiMathCiCheckRepresentationType.h
  /usr/local/include/sbml/packages/multi/validator/constraints/MultiMathCiCheckSpeciesReference.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueCompartmentReferenceIdsWithinCompartment.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueInSpeciesTypeBondIdsWithinMultiSpeciesType.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueMultiComponentIds.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueMultiIdBase.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureIdsWithinSpecies.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueSpeciesFeatureTypeIdsWithinMultiSpeciesType.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueSpeciesTypeComponentIndexIdsWithinMultiSpeciesType.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueSpeciesTypeInstanceIdsWithinMultiSpeciesType.h
  /usr/local/include/sbml/packages/multi/validator/constraints/UniqueSubListOfSpeciesFeaturesIdsWithinSpecies.h
  /usr/local/include/sbml/packages/qual/common/QualExtensionTypes.h
  /usr/local/include/sbml/packages/qual/common/qualfwd.h
  /usr/local/include/sbml/packages/qual/extension/QualExtension.h
  /usr/local/include/sbml/packages/qual/extension/QualModelPlugin.h
  /usr/local/include/sbml/packages/qual/extension/QualSBMLDocumentPlugin.h
  /usr/local/include/sbml/packages/qual/sbml/DefaultTerm.h
  /usr/local/include/sbml/packages/qual/sbml/FunctionTerm.h
  /usr/local/include/sbml/packages/qual/sbml/Input.h
  /usr/local/include/sbml/packages/qual/sbml/Output.h
  /usr/local/include/sbml/packages/qual/sbml/QualitativeSpecies.h
  /usr/local/include/sbml/packages/qual/sbml/Transition.h
  /usr/local/include/sbml/packages/qual/validator/QualConsistencyValidator.h
  /usr/local/include/sbml/packages/qual/validator/QualIdentifierConsistencyValidator.h
  /usr/local/include/sbml/packages/qual/validator/QualMathConsistencyValidator.h
  /usr/local/include/sbml/packages/qual/validator/QualSBMLError.h
  /usr/local/include/sbml/packages/qual/validator/QualSBMLErrorTable.h
  /usr/local/include/sbml/packages/qual/validator/QualValidator.h
  /usr/local/include/sbml/packages/qual/validator/constraints/QSAssignedOnce.h
  /usr/local/include/sbml/packages/qual/validator/constraints/QualCSymbolMathCheck.h
  /usr/local/include/sbml/packages/qual/validator/constraints/QualUniqueModelWideIds.h
  /usr/local/include/sbml/packages/qual/validator/constraints/ResultBecomesNegative.h
  /usr/local/include/sbml/packages/qual/validator/constraints/ResultExceedsMaximum.h
  /usr/local/include/sbml/units/FormulaUnitsData.h
  /usr/local/include/sbml/units/UnitFormulaFormatter.h
  /usr/local/include/sbml/units/UnitKindList.h
  /usr/local/include/sbml/util/ElementFilter.h
  /usr/local/include/sbml/util/IdFilter.h
  /usr/local/include/sbml/util/IdList.h
  /usr/local/include/sbml/util/IdentifierTransformer.h
  /usr/local/include/sbml/util/List.h
  /usr/local/include/sbml/util/MetaIdFilter.h
  /usr/local/include/sbml/util/PrefixTransformer.h
  /usr/local/include/sbml/util/Stack.h
  /usr/local/include/sbml/util/StringBuffer.h
  /usr/local/include/sbml/util/memory.h
  /usr/local/include/sbml/util/util.h
  /usr/local/include/sbml/validator/ConsistencyValidator.h
  /usr/local/include/sbml/validator/ConstraintMacros.h
  /usr/local/include/sbml/validator/IdentifierConsistencyValidator.h
  /usr/local/include/sbml/validator/InternalConsistencyValidator.h
  /usr/local/include/sbml/validator/L1CompatibilityValidator.h
  /usr/local/include/sbml/validator/L2v1CompatibilityValidator.h
  /usr/local/include/sbml/validator/L2v2CompatibilityValidator.h
  /usr/local/include/sbml/validator/L2v3CompatibilityValidator.h
  /usr/local/include/sbml/validator/L2v4CompatibilityValidator.h
  /usr/local/include/sbml/validator/L3v1CompatibilityValidator.h
  /usr/local/include/sbml/validator/L3v2CompatibilityValidator.h
  /usr/local/include/sbml/validator/MathMLConsistencyValidator.h
  /usr/local/include/sbml/validator/ModelingPracticeValidator.h
  /usr/local/include/sbml/validator/OverdeterminedValidator.h
  /usr/local/include/sbml/validator/SBMLExternalValidator.h
  /usr/local/include/sbml/validator/SBMLInternalValidator.h
  /usr/local/include/sbml/validator/SBMLValidator.h
  /usr/local/include/sbml/validator/SBOConsistencyValidator.h
  /usr/local/include/sbml/validator/StrictUnitConsistencyValidator.h
  /usr/local/include/sbml/validator/UnitConsistencyValidator.h
  /usr/local/include/sbml/validator/VConstraint.h
  /usr/local/include/sbml/validator/Validator.h
  /usr/local/include/sbml/xml/ExpatAttributes.h
  /usr/local/include/sbml/xml/ExpatHandler.h
  /usr/local/include/sbml/xml/ExpatParser.h
  /usr/local/include/sbml/xml/LibXMLAttributes.h
  /usr/local/include/sbml/xml/LibXMLHandler.h
  /usr/local/include/sbml/xml/LibXMLNamespaces.h
  /usr/local/include/sbml/xml/LibXMLParser.h
  /usr/local/include/sbml/xml/LibXMLTranscode.h
  /usr/local/include/sbml/xml/XMLAttributes.h
  /usr/local/include/sbml/xml/XMLBuffer.h
  /usr/local/include/sbml/xml/XMLConstructorException.h
  /usr/local/include/sbml/xml/XMLError.h
  /usr/local/include/sbml/xml/XMLErrorLog.h
  /usr/local/include/sbml/xml/XMLExtern.h
  /usr/local/include/sbml/xml/XMLFileBuffer.h
  /usr/local/include/sbml/xml/XMLHandler.h
  /usr/local/include/sbml/xml/XMLInputStream.h
  /usr/local/include/sbml/xml/XMLLogOverride.h
  /usr/local/include/sbml/xml/XMLMemoryBuffer.h
  /usr/local/include/sbml/xml/XMLNamespaces.h
  /usr/local/include/sbml/xml/XMLNode.h
  /usr/local/include/sbml/xml/XMLOutputStream.h
  /usr/local/include/sbml/xml/XMLParser.h
  /usr/local/include/sbml/xml/XMLToken.h
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  /usr/local/include/sbml/xml/XercesAttributes.h
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  /usr/local/include/sedml/common/common.h
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  /usr/local/include/sedml/common/operationReturnValues.h
  /usr/local/include/sedml/common/sedmlfwd.h
  /usr/local/include/sundials/sundials_band.h
  /usr/local/include/sundials/sundials_config.h
  /usr/local/include/sundials/sundials_dense.h
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  /usr/local/include/sundials/sundials_nvector.h
  /usr/local/include/sundials/sundials_spbcgs.h
  /usr/local/include/sundials/sundials_spgmr.h
  /usr/local/include/sundials/sundials_sptfqmr.h
  /usr/local/include/sundials/sundials_types.h
  /usr/local/include/tcl.h
  /usr/local/include/tclDecls.h
  /usr/local/include/tclOO.h
  /usr/local/include/tclOODecls.h
  /usr/local/include/tclPlatDecls.h
  /usr/local/include/tclThread.h
  /usr/local/include/tclTomMath.h
  /usr/local/include/tclTomMathDecls.h
  /usr/local/include/tdbc.h
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  /usr/local/include/tdbcInt.h
  /usr/local/include/tk.h
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  /usr/local/include/tkPlatDecls.h
  /usr/local/include/valgrind/libvex_guest_tilegx.h
  /usr/local/include/zmq.h
  /usr/local/include/zmq_utils.h

Warning: Unbrewed .la files were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .la files:
  /usr/local/lib/libsundials_cvode.la
  /usr/local/lib/libsundials_cvodes.la
  /usr/local/lib/libsundials_ida.la
  /usr/local/lib/libsundials_idas.la
  /usr/local/lib/libsundials_kinsol.la
  /usr/local/lib/libsundials_nvecserial.la
  /usr/local/lib/libzmq.la

Warning: Unbrewed .pc files were found in /usr/local/lib/pkgconfig.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected .pc files:
  /usr/local/lib/pkgconfig/libsbml.pc
  /usr/local/lib/pkgconfig/libzmq.pc
  /usr/local/lib/pkgconfig/muparser.pc
  /usr/local/lib/pkgconfig/tcl.pc
  /usr/local/lib/pkgconfig/tk.pc

Warning: Unbrewed static libraries were found in /usr/local/lib.
If you didn't put them there on purpose they could cause problems when
building Homebrew formulae, and may need to be deleted.

Unexpected static libraries:
  /usr/local/lib/libmuparser.a
  /usr/local/lib/libnuml-static.a
  /usr/local/lib/libsbml-static.a
  /usr/local/lib/libsedml-static.a
  /usr/local/lib/libsundials_cvode.a
  /usr/local/lib/libsundials_ida.a
  /usr/local/lib/libsundials_kinsol.a
  /usr/local/lib/libsundials_nvecserial.a
  /usr/local/lib/libtclstub8.6.a
  /usr/local/lib/libtkstub8.6.a
  /usr/local/lib/libzmq.a

Warning: You have unlinked kegs in your Cellar
Leaving kegs unlinked can lead to build-trouble and cause brews that depend on
those kegs to fail to run properly once built. Run `brew link` on these:
  docker
  isl@0.11
  cloog@0.15
  gnupg

Warning: Your Xcode (9.3.1) is outdated.
Please update to Xcode 9.4 (or delete it).
Xcode can be updated from the App Store.

To help us debug your issue please explain:

• What you were trying to do (and why) link hdf5 libraries that were installed using brew install hdf5 using pkg-config.
• What happened (include command output) pkg-config does not find hdf

  pkg-config hdf5 --cflags --libs
  Package hdf5 was not found in the pkg-config search path.
  Perhaps you should add the directory containing `hdf5.pc'
  to the PKG_CONFIG_PATH environment variable
  No package 'hdf5' found

• What you expected to happen I would have expected that 1) /usr/local/Cellar/hdf5/1.10.2_1/lib contains a folder pkgconfig containing a file hdf5.pc 2) /usr/local/lib/pkgconfig contains a symlink hdf5.pc to /usr/local/Cellar/hdf5/1.10.2_1/lib/pkgconfig/hdf5.pc
• Step-by-step reproduction instructions (by running brew install commands)

  brew install hdf5 pkg-config
  pkg-config hdf5 --cflags --libs
  ls /usr/local/Cellar/hdf5/1.10.2_1/lib
  ls /usr/local/lib/pkgconfig

[fxcoudert]

The HDF5 project indeed does not ship with a .pc file, and this is not an issue specific to Homebrew. If you feel that having a hdf5.pc would be suitable for portability, please report the issue to HDF5.

[fxcoudert]

It's possible that the file is installed only with cmake build. Investigating…

[tschoonj]

Yep: the release notes mention that they're only produced in the CMake build... Not cool

[stale[bot]]

This issue has been automatically marked as stale because it has not had recent activity. It will be closed if no further activity occurs.