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HongjianLi / istar

istar is a software-as-a-service platform for bioinformatics and chemoinformatics.
http://istar.cse.cuhk.edu.hk
Apache License 2.0
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How to install istar #3

Open gkxiao opened 6 years ago

gkxiao commented 6 years ago

Dear Hongjian,

How can I install istar?

Thank you very much,

Gaokeng Xiao

HongjianLi commented 6 years ago

Dear Gaokeng, I haven't got time to write a detailed document for istar. Below is a simple guideline. To install istar, briefly speaking, first use npm to install the dependent modules: npm install. This is a one-off exercise. Then start MongoDB: mongod -f mongod.conf --fork Finally modify web.js to suit your needs (e.g. delete the code for idock if you don't need it), then run with node.js with parameters for connecting for MongoDB, e.g. node web.js localhost mongodbuser mongodbpassword

gkxiao commented 6 years ago

Dear Jacky,

Thank you for your answer.

Gaokeng Xiao

Guangzhou MolCalX Information & Technology Ltd. Tel: +86 2038261356 Mobile: +86 18665593435 Email: gkxiao@molcalx.com Web: http://www.molcalx.com.cn blog:http://blog.molcalx.com.cn

------------------ Original ------------------ From: "Jacky Lee"notifications@github.com; Date: Mon, Feb 26, 2018 10:05 AM To: "HongjianLi/istar"istar@noreply.github.com; Cc: "Gaokeng Xiao"gkxiao@molcalx.com; "Author"author@noreply.github.com; Subject: Re: [HongjianLi/istar] How to install istar (#3)

Dear Gaokeng, I haven't got time to write a detailed document for istar. Below is a simple guideline. To install istar, briefly speaking, first use npm to install the dependent modules: npm install. This is a one-off exercise. Then start MongoDB: mongod -f mongod.conf --fork Finally modify web.js to suit your needs (e.g. delete the code for idock if you don't need it), then run with node.js with parameters for connecting for MongoDB, e.g. node web.js localhost mongodbuser mongodbpassword

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gkxiao commented 6 years ago

Hi Hongjian, There is something wrong with my installation. Would you mind helping me to check it. `Parsing idock/16_zprop.bin /public/gkxiao/software/istar/web.js:23 if (err) throw err; ^

Error: ENOENT: no such file or directory, open 'idock/16_zprop.bin' at Error (native)`

Thank you very much!

HongjianLi commented 6 years ago

Hi Gaokeng, web.js contains some code for reading the property file of ZINC molecules to be used by idock. Based on a mutual agreement with the developer of ZINC, I cannot provide you this file. I'm afraid it's not an easy task to set up the idock module. Good news is that other modules such as iview should be easy to set up. Modifications to web.js are required.

wizardme77 commented 5 years ago

Dear Hongjian,

To use mongocxx, it needs to install MNMLSTC for Step 2: Choose a C++17 polyfill in http://mongocxx.org/mongocxx-v3/installation/

Where can I get MNMLSTC installation package for C++17 polyfill?

Thanks, Wonjeon

HongjianLi commented 5 years ago

@wizardme77 Dear Wonjeon, MNMLSTIC will be automatically downloaded when you run make.