I keep running into an error about not being able to locate a temp file towards the end of my jobs and would really appreciate your help and guidance on how to troubleshoot it:
....
Mapping done for process 134719. Processed 12,798,837 reads
Processed 1,000,000 reads in 4.917 seconds. Total reads: 7,000,000 in child 134728
Processed 1,000,000 reads in 5.97 seconds. Total reads: 8,000,000 in child 134728
Processed 1,000,000 reads in 5.046 seconds. Total reads: 9,000,000 in child 134728
Processed 1,000,000 reads in 5.295 seconds. Total reads: 10,000,000 in child 134728
Processed 1,000,000 reads in 6.769 seconds. Total reads: 11,000,000 in child 134728
Processed 1,000,000 reads in 5.164 seconds. Total reads: 12,000,000 in child 134728
Mapping done for process 134728. Processed 12,798,819 reads
Merging results
Traceback (most recent call last):
File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/bin/CITE-seq-Count", line 8, in
sys.exit(main())
File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/lib/python3.7/site-packages/cite_seq_count/main.py", line 418, in main
os.remove(file_path)
FileNotFoundError: [Errno 2] No such file or directory: './temp_6'
All the temp files including temp_0 to temp_6 were generated and present in the directory while the job was running but now only temp_7 to temp_25 files are found in the directory.
Please let me know if you have any suggestions to try. I would greatly appreciate your time and help!
Hello,
I keep running into an error about not being able to locate a temp file towards the end of my jobs and would really appreciate your help and guidance on how to troubleshoot it:
.... Mapping done for process 134719. Processed 12,798,837 reads Processed 1,000,000 reads in 4.917 seconds. Total reads: 7,000,000 in child 134728 Processed 1,000,000 reads in 5.97 seconds. Total reads: 8,000,000 in child 134728 Processed 1,000,000 reads in 5.046 seconds. Total reads: 9,000,000 in child 134728 Processed 1,000,000 reads in 5.295 seconds. Total reads: 10,000,000 in child 134728 Processed 1,000,000 reads in 6.769 seconds. Total reads: 11,000,000 in child 134728 Processed 1,000,000 reads in 5.164 seconds. Total reads: 12,000,000 in child 134728 Mapping done for process 134728. Processed 12,798,819 reads Merging results Traceback (most recent call last): File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/bin/CITE-seq-Count", line 8, in
sys.exit(main())
File "/nfs/sw/citeseqcount/citeseqcount-1.4.4/python/lib/python3.7/site-packages/cite_seq_count/main.py", line 418, in main
os.remove(file_path)
FileNotFoundError: [Errno 2] No such file or directory: './temp_6'
All the temp files including temp_0 to temp_6 were generated and present in the directory while the job was running but now only temp_7 to temp_25 files are found in the directory.
Please let me know if you have any suggestions to try. I would greatly appreciate your time and help!