Running dropSeqPIpe on 10X data

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

Creative Commons Attribution Share Alike 4.0 International

147 stars 47 forks source link

Running dropSeqPIpe on 10X data #106

Open suminwei2772 opened 4 years ago

suminwei2772 commented 4 years ago

Hi, I am hoping to run dropSeqPipe on some 10X data (V1 chemistry). I was wondering if I would need to supply a different adapters.fa file (not the default one that comes with dropSeqPipe) in this case? Would I need to make any other changes to the input files? Thank you, Lisa

Hoohm commented 4 years ago

Hey @suminwei2772 I would check this github page, it will help out with any specifics linked to the V1 chemistry you need.

https://github.com/Teichlab/scg_lib_structs