Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
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Also a problem with ViolinPlot #114

Open ljouneau opened 3 years ago

ljouneau commented 3 years ago

Hi,

I encountered problems with the violinplot step.

First failure : package scatterplot3d was missing so I added it.

Second failure : package doParallel was missing so I added it.

Third failure : package VGAM was missing but now I am stucked package ‘VGAM’ is not available (for R version 3.4.1)

Indeed, VGAM depends R (≥ 3.5.0)

I am really a newbye with snakemake and conda. How could I upgrade R version installed ?

Thank you in advance. Best regards