Question: should this be fastx, no fatsx ?

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

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Question: should this be fastx, no fatsx ? #36

Closed colindaven closed 6 years ago

colindaven commented 6 years ago

rules/map.smk

17	'data/{sample}/Log.final.out'
18	params:
19	extra="""--outReadsUnmapped Fatsx\
20	--outFilterMismatchNmax {}\

Hoohm commented 6 years ago

Hello @colindaven

You are totally right! That might explain why it didn't work. I didn't look more into it at the time and forgot I wanted to implement that. Nice catch, thanks :)

colindaven commented 6 years ago

Nice, glad I could help. Thanks for the pipeline, it's very useful so far.

Hoohm commented 6 years ago

Glad it helps out :) If you're missing any features, don't hesitate to make an issue or propose a pull request