Hoohm
commented
6 years ago Hey @colindaven I've never experienced this before. Although, I don't use the "activation" of env anymore since Snakemake does that for each rule now.
Good tip though might help people with a similar issue :)
can I close it?
As you probably know, conda has changed a lot recently.
I experienced this error : which conda conda could not be found
After entering the following within the conda env, the pipeline can find conda again. I.e. conda does not seem to be installed by default within a conda env, at least for me.
conda install conda