Closed seb-mueller closed 5 years ago
using DEBUG: True flag in config.yaml to produce R-objects in debug folder which can be used for debugging.
DEBUG: True
config.yaml
debug
'summary/barcode_stats_pre_filter.csv', 'summary/barcode_stats_post_filter.csv',
Example files are attached, (csv was replaced by txt since github doesn't allow csv).
At the moment, I've included the rule into map.smk again, but we should probably create a new rule-file e.g. post-processing.smk or so?
map.smk
post-processing.smk
barcode_stats_pre_filter.txt barcode_stats_post_filter.txt
Experimental debug mode for R-scripts in snakemake
using
DEBUG: True
flag inconfig.yaml
to produce R-objects indebug
folder which can be used for debugging.Producing barcode summaries to easily compare experiments/samples:
Example files are attached, (csv was replaced by txt since github doesn't allow csv).
At the moment, I've included the rule into
map.smk
again, but we should probably create a new rule-file e.g.post-processing.smk
or so?barcode_stats_pre_filter.txt barcode_stats_post_filter.txt