search

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
Creative Commons Attribution Share Alike 4.0 International
147 stars 47 forks source link

I have issue on STAR running part. help!!! #61

Closed Jun-Lizst closed 5 years ago

Jun-Lizst commented 5 years ago

It will generate some big index files when running snakemake map. How can I direct the index directory to snakemake,since I have build up the index on my own.

Hoohm commented 5 years ago

@Jun-NIBS As long as you store it where it's expected, the pipeline should recognize and use it. Although, I would not recommend doing this. It's probably going to lead to small issues that are annoying to fix whereas just rerunning it through the pipeline will work automatically.

Jun-Lizst commented 5 years ago

Thanks for answer. I’ll try.

Best Jun

发送自 Windows 10 版邮件https://go.microsoft.com/fwlink/?LinkId=550986应用

发件人: Patrick Roelli notifications@github.com 发送时间: Friday, November 16, 2018 7:28:42 PM 收件人: Hoohm/dropSeqPipe 抄送: Jun; Mention 主题: Re: [Hoohm/dropSeqPipe] I have issue on STAR running part. help!!! (#61)

@Jun-NIBShttps://github.com/Jun-NIBS As long as you store it where it's expected, the pipeline should recognize and use it. Although, I would not recommend doing this. It's probably going to lead to small issues that are annoying to fix whereas just rerunning it through the pipeline will work automatically.

― You are receiving this because you were mentioned. Reply to this email directly, view it on GitHubhttps://github.com/Hoohm/dropSeqPipe/issues/61#issuecomment-439365790, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AjIOUrcPPKMp8JvZhDZctiiRdDmwDaTUks5uvqFqgaJpZM4YkUyM.