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Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
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I have issue on STAR running part. help!!! #61

Closed Jun-Lizst closed 6 years ago

Jun-Lizst commented 6 years ago

It will generate some big index files when running snakemake map. How can I direct the index directory to snakemake,since I have build up the index on my own.

Hoohm commented 6 years ago

@Jun-NIBS As long as you store it where it's expected, the pipeline should recognize and use it. Although, I would not recommend doing this. It's probably going to lead to small issues that are annoying to fix whereas just rerunning it through the pipeline will work automatically.

Jun-Lizst commented 6 years ago

Thanks for answer. I’ll try.

Best Jun

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发件人: Patrick Roelli notifications@github.com 发送时间: Friday, November 16, 2018 7:28:42 PM 收件人: Hoohm/dropSeqPipe 抄送: Jun; Mention 主题: Re: [Hoohm/dropSeqPipe] I have issue on STAR running part. help!!! (#61)

@Jun-NIBShttps://github.com/Jun-NIBS As long as you store it where it's expected, the pipeline should recognize and use it. Although, I would not recommend doing this. It's probably going to lead to small issues that are annoying to fix whereas just rerunning it through the pipeline will work automatically.

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