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Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
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KeyError for 'barcode-whitelist' #81

Closed abmmki closed 4 years ago

abmmki commented 5 years ago

I am getting following error, irrespective of I have file name or not having any name of barcode-whitelist:

KeyError in line 22 of /home/bin/dropSeqPipe/Snakefile: 'barcode-whitelist' File "/home/bin/dropSeqPipe/Snakefile", line 22, in

From config file, I also tried deleting the parameter line: "barcode-whitelist:"

but didn't work. Version 0.4 using.

Let me know what I am missing thanks

abmmki commented 5 years ago

I see the problem. in config.yaml with would be 'barcode-whitelist', not with underscore 'barcode_whitelist'

Also, read_length in sample.csv file, not "read_lengths" This extra (s) creating problem

Hoohm commented 5 years ago

Hello @abmmki I guess we should release a new version with those small fixes. They are actually already on the master branch.