Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
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Problems when runing from conda env #90

Open mcjmigdal opened 5 years ago

mcjmigdal commented 5 years ago

Hi,

with colleague we run into some troubles when running your pipeline while being in active conda environment. Deactivating it solved our problems. I don't think it's relevant to dig this issue, but perhaps you could add a warning for this in your documentation. Or highlight it more if it is already there.

Cheers MM

Hoohm commented 5 years ago

Hello @mcjmigdal Thanks for pointing it out. I'll keep this here until we add it to the documentation.

Thanks for the tip!