migrate to Seurat version 3

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

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migrate to Seurat version 3 #95

Closed TomKellyGenetics closed 4 years ago

TomKellyGenetics commented 4 years ago

Test jobs aren't working on my local machine and Travis doesn't seem to work on my fork. I think this fixes the missing "gene.columns" in `Seurat::Read10X" without compressing files (as discussed in #94).

Hoohm commented 4 years ago

I think I found out why. I'm still in the subway and don't want to download the full R env through my phone. I'll push a commit in an hour or so.