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Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow
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Major overhaul of documentation towards version 0.6 #96

Open seb-mueller opened 4 years ago

seb-mueller commented 4 years ago

Just updated the documentation with major restructuring based on some user feedback who found it was a bit confusing to follow.

It's now more logically structured in, 1) installing, 2) setting up an exeriment, 3) running The files are renamed/merged to reflect that, i hope you agree with it!? Most notably, the new Setting-up-an-experiment.md combines the now deleted clusters.md, Create-config-files.md and Reference-Files.md.

I thought to use a PR rather than push it directly to be able discuss the changes here.

Hoohm commented 4 years ago

Is it ok with you if I take some time this weekend to review it?

Hoohm commented 4 years ago

@seb-mueller Realy nice modifications! I like them :)

Found a couple of mistakes here and there. I'm having some issues pushing to remote for some reason. Probably linked to my switch from https to ssh.

Can you create a feature branch called: feature/doc_v0.6 and PR on this. Maybe I can pull from it and then push again.