NH tag not found in BAM file

Hoohm / dropSeqPipe

A SingleCell RNASeq pre-processing snakemake workflow

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NH tag not found in BAM file #98

Closed abmmki closed 4 years ago

abmmki commented 4 years ago

HI, previous mereging script not keeping NH tags. New version is OK. Also, deleting "temp" prefix from *.smk files keeps all files intermediate files including wide format expression metrix.

best,

Hoohm commented 4 years ago

Yes, the latest version fixed this issue.

There is an option to keep all temp files --no-temp