search

HopkinsIDD / COVIDScenarioPipeline

Public shared code for doing scenario forecasting and creating reports for various governmental entities.
GNU General Public License v3.0
104 stars 47 forks source link

Pre-generate USA spatial configuration #85

Open jcblemai opened 4 years ago

jcblemai commented 4 years ago

Maybe we want someone to write a script that takes USA wide ACS commute, CSSE cases and pop data to generate a seeding.csv, geodata.csv and mobility.txt for any state easily ?

like Rscript BuildSpatialSetup.R CA OR WA or Rscript BuildSpatialSetup.R USA -AK.

It'll help if users have something functional to start with.

jkamins7 commented 4 years ago

yeah, something like this is totally doable, but we haven't done it yet

khwilson commented 4 years ago

FWIW, I wrote this script that does the shapefile importation: https://gist.github.com/khwilson/2fc31a0a8b365790828020616bd157ba

jkamins7 commented 4 years ago

@khwilson I think we'd like that as a pull request. @jcblemai is there a good place in the repo for him to put it?

jcblemai commented 4 years ago

We should have a build-setup folder, with @khwilson script (very nice btw) and every (not deprecated) script we removed from data/, along with @jkamins7 USA script

khwilson commented 4 years ago

Happy to do a PR. Just let me know where to put it :)

On Sat, Apr 4, 2020 at 9:34 AM Joseph Lemaitre notifications@github.com wrote:

We should have a build-setup folder, with @khwilson https://github.com/khwilson script (very nice btw) and every (not deprecated) script we removed from data/, along with @jkamins7 https://github.com/jkamins7 USA script

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/HopkinsIDD/COVIDScenarioPipeline/issues/85#issuecomment-609029433, or unsubscribe https://github.com/notifications/unsubscribe-auth/AALU5EQXGE45CIBFHM5IMBLRK4ZOPANCNFSM4LZPJP6Q .

khwilson commented 4 years ago

Just for reference, this is the setup that I have been using for Rhode Island at the moment. It's one big ol' docker jank command, but it does all the setup for you.

https://github.com/khwilson/COVID-Setup

jkamins7 commented 4 years ago

@khwilson we don't have a place for python scripts at the moment. Can you create a top level folder called scripts and put it there?