UGA, 2016-2020, Error in if (any(efbmi_per_chain < threshold))

HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

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UGA, 2016-2020, Error in if (any(efbmi_per_chain < threshold)) #155

Open NedaJalali-codes opened 2 years ago

NedaJalali-codes commented 2 years ago

UGA 2016-01-01:2020-12-31

Error in if (any(efbmi_per_chain < threshold)) { : missing value where TRUE/FALSE needed

Enter a frame number, or 0 to exit

1: source("Analysis/R/execute_pipeline.R") 2: withVisible(eval(ei, envir)) 3: eval(ei, envir) 4: eval(ei, envir) 5: execute_pipeline.R#918: chol_model$sample(seed = 1234, data = stan_data, ch 6: CmdStanMCMC$new(runset) 7: initialize(...) 8: self$diagnostic_summary(diagnostics, quiet = FALSE) 9: check_ebfmi(post_warmup_sampler_diagnostics)

QLLZ commented 2 years ago

the same issue as #153

jkamins7 commented 2 years ago

This is usually a number of iterations issue. Can you try running with more iterations?