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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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BEN 2020, sCH = NA, sCH_R > 0 #170

Open NedaJalali-codes opened 2 years ago

NedaJalali-codes commented 2 years ago

When the suspected_cases_R is > 0, but suspected_cases = NA, should we have NA suspected_cases in Table 1 of the report?

BEN 2020, suspected_cases = 198 (checked the observation_data after pulling info from SQL). Then, in censoring process, the suspected_cases changes to NA and suspected_cases_R changes to 198. I could not understand what censoring does exactly. I checked the report and saw that the suspected_cases is NA which is correct because censoring changed the 198 to NA for this variable.

jkamins7 commented 2 years ago

this is the current expected behaviour. we could consider changing this behaviour, or to add a separate figure for censored observations.