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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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BFA 2011-15 #379

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Model convergence for sd_w and w is a bit unstable, and <5% Rhats exceeded the threshold. There are no cases in 2013-15 and not that many observations at the subnational level. Gridded and observation level fits seem pretty good.

Opinion: Overall things look okay but would be good to get second opinion due to slight instability in trace plots.

javierps commented 1 year ago

There is just so little data that it is not surprising this is hard.

I would suggest accepting. Moving this to accepted.

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Modeled cases, convergency, and population all look good.

Suggestion: approve

eclee25 commented 1 year ago

All diagnostics look good. Opinion: approve

eclee25 commented 1 year ago

sd_w is high and unstable in the traceplot. Since there is minimal subnational data, try the no-mixture sd_w prior

QLLZ commented 1 year ago

Data pull, model run:

HASH: 05f598b95b5d42ac0049963f8a0b7e04d6f1dbd7

javierps commented 1 year ago

All OK.

Suggestion: Accept.

eclee25 commented 1 year ago

All OK despite rho convergence issues. Approve