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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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COG 2011-15 #391

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Maps, fits, Rhats, and traceplots all look good overall. Data has lots of cases in 2011-13 and none in 2014-15.

Opinion: Approve

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

Failed stan model run log file

QLLZ commented 1 year ago

Rerun on dev_u_combs_fix

HASH: e56580fa5ddab00293e31ff90139351f80ae3f6c

QLLZ commented 1 year ago

country data report

eclee25 commented 1 year ago

All model diags look good but pipeline population estimates are too low (35-40% below UNWPP). 2011 estimate could be improved by increasing censoring threshold.

Temp Approve - could increase censoring threshold to improve 2011 estimate, model is a candidate for post-hoc population adjustment.

QLLZ commented 1 year ago

Data pull, model run:

HASH: 05f598b95b5d42ac0049963f8a0b7e04d6f1dbd7

javierps commented 1 year ago

Sep 2023 Production run: all OK except for convergence of std_w which is not perfect.

Suggestion: accept.

eclee25 commented 1 year ago

Agree with J. Approve.