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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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DJI 2016-20 #394

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Set spatial_effect: 'no' - There are limited or no non-zero observations in this model

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

failed data pull log file

QLLZ commented 1 year ago

Rerun data pull

QLLZ commented 1 year ago

model run

HASH f56d5a942b106ad7750b9be31c0456cefa5b6dc7

javierps commented 12 months ago

no subnat ok for no-W.

QLLZ commented 11 months ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 11 months ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 11 months ago

country data report

QLLZ commented 11 months ago

Results look good in general. Two OCs (OC 374 and OC 224) are conflicted in Table 6.

Suggestion: double check the two conflicted OCs for 2016.

QLLZ commented 11 months ago

who annual report (OC 374) was under reported. The other source is unclear.

eclee25 commented 11 months ago

No subnat data - no-W model. Diagnostics look good. Approve

javierps commented 9 months ago

Sep 2023 Production run: traceplots show some issues, conflicting obs in 2016.

Suggestion: investigate further.

eclee25 commented 9 months ago

After removing the unused parameters from sampling, all diags look good. Approve