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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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ERI 2011-15 #396

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Set spatial_effect: 'no' - There are limited or no non-zero observations in this model

QLLZ commented 1 year ago

Updated config Data pull and model run: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

javierps commented 1 year ago

No cases.

Ok no-W run.

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

All zero cases. Results look good.

Suggestion: accpet.

eclee25 commented 1 year ago

All 0s no-W model. All diag look good. Something weird with one of the district names is causing cdr formatting errors Approve

javierps commented 1 year ago

Sep 2023 Production run: all OK, except for 1 chain with convergence issues. Rhats ok.

Suggestion: investigate further.

eclee25 commented 1 year ago

After removing the unused parameters from sampling, all diags look good. Approve