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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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GAB 2016-20 #400

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Set spatial_effect: 'no' - There are limited or no non-zero observations in this model

QLLZ commented 1 year ago

Updated config Data pull and model run: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

javierps commented 1 year ago

no cases.

Ok no-W run.

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Populations are overestimated consistenly, although cases are 0. Others look good.

Suggestion: accept if the population is acceptable.

eclee25 commented 1 year ago

All-0 no-W model. Pop overestim by ~20% which seems high but don't think this will affect results as this is an all-0 model. Don't think special post processing would be needed. Other diags seem good. Approve

javierps commented 11 months ago

Sep 2023 Production run: all OK, except for 1 chain with convergence issues.

Suggestion: investigate further.

eclee25 commented 11 months ago

After removing the unused parameters from sampling, all diags look good. Approve