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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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GIN 2011-15 #403

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Convergence, fits, Rhats, and match to GAM input all look pretty good. Seems like there may be some small sfrac cells around the Northeast and Western borders

Opinion: Investigate border sfracs before approving

javierps commented 1 year ago

Agree with @eclee25

eclee25 commented 1 year ago

Opinion: Temp Approve and rerun with higher sfrac_thresh_border and same sfrac_thresh_conn after PR 475 is merged.

QLLZ commented 1 year ago

Config

Data pull(32G):

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

Model run (idm2):

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Observations have conflicted number of cases for 2011, 2012, and 2013. Others look good.

Suggestion: double check those OCs in Table 6.

eclee25 commented 1 year ago

Opinion: Audit OC 129 as the data for 2011-13 seems suspect (Table 6 in cdr) and then rerun.

QLLZ commented 1 year ago

Audited OC 129 (cases were actually the precipitation in the source doc).

QLLZ commented 1 year ago

Rerun on dev:

HASH: 95a46cedc8aec45d530a29e658278ef9321234a9

QLLZ commented 1 year ago

Updated country data report

eclee25 commented 1 year ago

All diag look good in post-audit report. Approve

javierps commented 11 months ago

Sep 2023 production run: all OK except for few observations with Rhat above thresh (2%), all below 1.08.

Suggestion: accept.

eclee25 commented 11 months ago

Approve