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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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GMB 2011-15 #405

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Set spatial_effect: 'no' - There are limited or no non-zero observations in this model

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

failed data pull log file

eclee25 commented 1 year ago

Trace plots don't look great but confirmed that all of these have 0 cases

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Populations are underestimated consistently although all cases are 0. Others look good.

Suggestion: accept.

eclee25 commented 1 year ago

All-0 no-W model, all diags look good. Approve

eclee25 commented 1 year ago

I am moving this to the "Skip / No Run " column even though we have a run because there were no cases reported in the 2016-2020 period and it won't make sense to have just one period in the paper.