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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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GNQ 2016-20 #409

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Set spatial_effect: 'no' - There are limited or no non-zero observations in this model

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

failed data pull log file

eclee25 commented 1 year ago

Trace plots okay and confirmed that there are 0 cases

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Populations are underestimated although all cases are 0. Others look good.

Suggestion: accept if population is acceptable.

eclee25 commented 1 year ago

All 0s, no-W model. Pop is border-line underestimated (just under 20% difference) but it's fine since there is no burden here. Approve.

javierps commented 11 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

After removing the unused parameters from sampling, all diags look good. Approve