KEN 2011-15

[QLLZ]

Data pull: HASH: 10db6c83d6486774d3148785df24b3145f375bb2 config

[QLLZ]

reran the initial values data after the new updates on initial values HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

[QLLZ]

Country data report

[eclee25]

Convergence, fits, Rhats, match to GAM input all look good.

Opinion: Approve

[QLLZ]

Config

Data pull(32G):

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

[QLLZ]

Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

[QLLZ]

Failed model run log file

[QLLZ]

Rerun on dev_u_combs_fix

HASH: e56580fa5ddab00293e31ff90139351f80ae3f6c

[QLLZ]

country data report

[QLLZ]

All look good.

One potential issue: duplicated observations for 2015 (there are multiple OCs with the exact same number of total annual cases 10568). also maybe consiering using a hight censoring threshold based on 2015 data pattern.

[eclee25]

Model diags look good. As Qulu says, the 2015 annual obs in Tab 6 look like a mess but I don't think it's affecting the inference too much.

Not sure why there are "unknown 1-7" admin 2 level units (in the output shapefiles -- should be a GADM shape) -- perhaps take a look at this in get_country_admin_units taxdat function. Where are they located and what are they called in rgeoboundaries?

Approve after investigation of unknown 1-7 units.

[QLLZ]

@eclee25 I just checked that the those unknown 1-7 are pulled from gadm. I tried to find the same location from rgeoboundaries, but the overlapps between gadm and rgeoboundaries does not seem to be consistent (see the screenshot below: the yellow line is rgeoboudnaries and the black boundary is from gadm) The red areas are those unknown locations. I feel like what we can do is to switch to rgeoboundaries for KEN since there are no unknown location names in admin2 for ken in rgeoboundaries.

[eclee25]

The KEN rgeoboundaries shapefiles have some misalignment between admin levels unfortunately... (black: adm2, blue: adm1, red: adm0) I think maybe we stick to GADM for now unless we get pushback about the admin unit names later.

[javierps]

Sep 2023 Production run: all OK.

Check if rgeoboundaries are used as discussed in the thread above.

Suggestion: accept.

[eclee25]

Approve - these are the GADM units.