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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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LBR 2016-20 #414

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Convergence is pretty good with some instability in rho and sd_w. Fits, Rhats and maps seem okay. May want to investigate why there are higher rates in the SW region as there doesn't seem to be too much reported there in GAM input, but I think it's due to smoothing of higher rates between the Eastern side and Southern tip

Opinion: Would like to Approve if second opinion agrees

javierps commented 1 year ago

Agree to approve.

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Population are slightly underestimated. Other results look good.

Suggestion: accept.

eclee25 commented 1 year ago

Diags look good. Approve

javierps commented 12 months ago

Sep 2023 Production run:

convergence of rho and std_w not perfect, all Rhats OK and validation OK.

Suggestion: accept.

eclee25 commented 12 months ago

Agree with J. Approve