HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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LSO 2011-15 #415

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

log file

QLLZ commented 1 year ago

There's no gadm shapefile at admin2 for LSO.

eclee25 commented 1 year ago

Opinion: Rerun with spatial_effect: no and summary_admin_levels: "[0,1]"

QLLZ commented 1 year ago

Updated config

QLLZ commented 1 year ago

Data pull: HASH 02faaed1a21116cebc29533c68ec0d99fe78d08f

QLLZ commented 1 year ago

Model run: HASH 02faaed1a21116cebc29533c68ec0d99fe78d08f

QLLZ commented 1 year ago

Country data report log file

QLLZ commented 1 year ago

Generated quantity file issue

QLLZ commented 1 year ago

This seems to be all 0 runs. should be no w?

javierps commented 1 year ago

yes

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

failed data pull log file

eclee25 commented 1 year ago

I think this will be an exception no-W run because we will use only summary_levels 0 & 1.

eclee25 commented 1 year ago

Trace plots don't look great but confirmed that there are 0 cases

eclee25 commented 1 year ago

No-W run settings but include only summary_levels 0 & 1

QLLZ commented 1 year ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

Data pull failed log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Populations are slightly underestmated. All cases are 0. Results look good.

Suggestion: accept.

eclee25 commented 1 year ago

There are 0 cases so this should have been a no-W run. Opinion: Rerun with no-W settings, admin levels 0&1 only

QLLZ commented 1 year ago

Updated config

Updated country data report

eclee25 commented 1 year ago

0-case no-W run. Minor traceplot issues but other diags ok. Approve

javierps commented 1 year ago

Sep 2023 Production run: convergence issues, Rhats OK.

Suggestion: investigate further.

eclee25 commented 1 year ago

After removing the unused parameters from sampling, all diags look good. Approve