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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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NER 2011-15 #429

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

eclee25 commented 1 year ago

Convergence, fits, Rhats look good, but there is a strong effect of the adjacency matrix on the rate maps that seems unusual.

Opinion: Investigate adjacency matrix

javierps commented 1 year ago

I think that the difficult thing here for the model is that the population in the North-east is very low (figure 15), so the rates can vary widely without much effect on the estimated number of cases.

One solution could be to set a lower threshold on the population density to consider it as 0?

javierps commented 1 year ago

Dagar fix should work. Standard run.

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Results look good.

Suggestion: accept.

eclee25 commented 1 year ago

All diags look good. Approve

javierps commented 12 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

Approve