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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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NGA 2011-15 #431

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

log file

QLLZ commented 1 year ago

rerun from data pull: data pull on dev: HASH c9a89d4ac5e4f63cb75fa5c006a900ece2839199

QLLZ commented 1 year ago

Model run: HASH 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

country data report

eclee25 commented 1 year ago

Convergence, fits, maps, GAM input comparison, and Rhats look good

Opinion: Approve

QLLZ commented 1 year ago

Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Results look good in general. But cases for 2013 seem to be underestimated compared to WHO annual report.

Suggestion: accept if 2013 modeled cases look good.

eclee25 commented 1 year ago

Diags look good. 2013 seems underestimated because there are many UNICEF observations with a tfrac > 0.65 which are all treated as full obs Temp approve -- we could technically consider removing some of the UNICEF obs

javierps commented 1 year ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 1 year ago

Approve