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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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RWA 2011-15 #433

Open eclee25 opened 1 year ago

eclee25 commented 1 year ago

Launch with spatial_effect:no

eclee25 commented 1 year ago

Rachel finalized the OC 21372

QLLZ commented 1 year ago

Updated config

QLLZ commented 1 year ago

Data pull: HASH 02faaed1a21116cebc29533c68ec0d99fe78d08f

QLLZ commented 1 year ago

Data pull failed: log file

QLLZ commented 1 year ago

Rerun data pull HASH: 7b41f4708401039b8a591a5a92f9c8a3b03d9fe0

QLLZ commented 1 year ago

Data pull failed: log file

QLLZ commented 1 year ago

rerun on dev: HASH; a4d49235ab2737ed5eaafe23264a831ab9cceef7

QLLZ commented 1 year ago

Data pull failed: log file

javierps commented 1 year ago

Very small amount of data. Could consider a no-W run.

QLLZ commented 1 year ago

rerun with spatial_effect = no

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

model run

HASH f56d5a942b106ad7750b9be31c0456cefa5b6dc7

javierps commented 1 year ago

One subnational obs. Can try re-running with spatial random effect.

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Modeled cases are slightly overestimated although all are fewer than 100 cases.

others look good.

Suggestion: accept.

eclee25 commented 1 year ago

All diags look good. Approve

javierps commented 12 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

Action Required: @QLLZ Rerun cdr so Tab 6 shows the 2013 imputed obs 2012 is overestimated and I think 2013 may be as well. There is very little subnational data and not too many cases overall so perhaps this is ok.

eclee25 commented 10 months ago

Slight overestimation in 2013 imputed obs too. Approve