RWA 2016-20 - Githubissues

HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure

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RWA 2016-20 #434

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

country data report failed: log file

QLLZ commented 1 year ago

Country data report

In this report, there are no plots of

Variance of cases in gam input per grid cell
Variance of rates per 100000 in gam input per grid cell

because there are few data, so each t, sx, and sy in gam input only has one y value. variance is unable to be estimated.

eclee25 commented 1 year ago

Some convergence issues in sd_w and w, but not too problematic. Fits, Rhats, and maps otherwise look ok. Only one year has substantial case counts and doesn't seem to have subnational data.

Opinion: Approve

eclee25 commented 1 year ago

No subnational data --> No-W run

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Results look good.

Suggestion: accept.

eclee25 commented 1 year ago

No subnat no-W model. All diags look good. Approve

javierps commented 11 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

After removing the unused parameters from sampling, all diags look good. Approve