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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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SLE 2016-20 #440

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

log file

QLLZ commented 1 year ago

rerun from data pull: data pull on dev: HASH c9a89d4ac5e4f63cb75fa5c006a900ece2839199

QLLZ commented 1 year ago

Model run: HASH 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

country data report

javierps commented 1 year ago

Low number of cases, not so nice w pattern, but validity and convergence ok.

Suggestion: accept.

javierps commented 1 year ago

May also consider a no-w run.

eclee25 commented 1 year ago

All relatively good considering low cases counts in all years. Opinion: Temporary Accept and rerun with spatial_effect: no

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Modeled cases look good. Convergency looks good. Population are underestimated consistenly.

Suggestion: accept if population is acceptable.

Another question is that: this is not a w run while the previous comment said to run without spatial effect.

eclee25 commented 1 year ago

All diags look good. Use of standard run is ok. Approve

javierps commented 12 months ago

Convergence issue for std_w, rhats issues.

Suggestion: re-run with no-mixture.

eclee25 commented 11 months ago

No-mixture sd_w run looks good. Approve