Open eclee25 opened 1 year ago
Model run:
HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8
This seems to be due to the gam input object in the grid-level variance plot. @QLLZ could you check the values that are passed to the plotting function?
@javierps Yeah, I changed the grid-level_variance plot and a new issue came up. it's about the w value: the length of w value is different in sf_grid and model.rand. After checking the log file of the model run, i found that only 1 chain successfully finished, chain 1, 3-4 actually faild.
Thanks @QLLZ .
Stan model failure is possibly due to the same initialization issue in COD 2016.
Rerun on dev with drop_multiyear_adm0: yes
config option
Data pull:
HASH 02faaed1a21116cebc29533c68ec0d99fe78d08f
Model run:
HASH 02faaed1a21116cebc29533c68ec0d99fe78d08f
Questioning whether model was run on correct branch with correct taxdat installation as there are still multi-year admin 0 obs in the stan input when these should have been dropped.
Opinion: rerun after pull / reinstallation
rerun on dev:
HASH; a4d49235ab2737ed5eaafe23264a831ab9cceef7
Model run on dev:
HASH: a4d49235ab2737ed5eaafe23264a831ab9cceef7
Data pull:
HASH: 23e2dc77a189bac73d6b4359bc83d99dfb99cf2f
Model run:
HASH: 23e2dc77a189bac73d6b4359bc83d99dfb99cf2f
Data pull:
HASH: d6950c7afd2b12c35abe6d5321ddfd31a75b2cb0
Model run on dev_drop_adm0_censored
HASH: d6950c7afd2b12c35abe6d5321ddfd31a75b2cb0
After drop_censored_adm0 and drop_multiyear_adm0 were turned on (with drop_censored_adm0_thresh: 1), the model was able to initialize and the outputs converged and look good.
Opinion: Exception run with drop_censored_adm0: yes and drop_censored_adm0_thresh: 1
Standard Run but with drop_censored_adm0_thresh: 1
Rerun on dev_u_combs_fix
HASH: e56580fa5ddab00293e31ff90139351f80ae3f6c
Same high incidence rate map as the other time period. Same pop estimates issue.
Modeled cases look good. Convergency looks good.
All diags look good but pop estimates are way too low. Will adjust in post processing
Approve
Standard settings with drop_censored_adm0_thresh: 1.0
With the new dummy variable censoring implementation, this model now works with the standard settings. No need to use a non-standard drop_censored_adm0_thresh
parameter.
Sep 2023 Production run: all OK.
Suggestion: accept.
Approve
Data pull: HASH:
6772ea9da4f43ddc3da11c494a573af2ca3dd3c8
config