HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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SWZ 2016-20 #446

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

country data report failed: log file

QLLZ commented 1 year ago

Country data report

  1. Variance of cases in gam input per grid cell
  2. Variance of rates per 100000 in gam input per grid cell

because there are few data, so each t, sx, and sy in gam input only has one y value. variance is unable to be estimated.

javierps commented 1 year ago

Really very little data here. Only a couple of cases in the national level imputation for 2017. Not surprising to have convergence issues in w and sd_w.

Suggestion: Separate category for these very low count runs.

eclee25 commented 1 year ago

Opinion: Temp Approve and rerun with spatial_effect: no

QLLZ commented 1 year ago

Updated config Data pull: HASH: f56d5a942b106ad7750b9be31c0456cefa5b6dc7

QLLZ commented 1 year ago

model run

HASH f56d5a942b106ad7750b9be31c0456cefa5b6dc7

eclee25 commented 1 year ago

All looks good

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

Failed data pull log file

QLLZ commented 1 year ago

Data pull and model run (dev_taxdat_funs_fix branch):

HASH: 31f14227cd28a9824db72b7a6c45b0d65652872e

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Results look good.

Suggestion: accept.

eclee25 commented 1 year ago

No subnat data no-W model. All diags look good. Approve

javierps commented 11 months ago

Sep 2023 Production run: convergence issues,

Suggestion: investigate further.

eclee25 commented 11 months ago

After removing the unused parameters from sampling, all diags look good. Approve