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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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TCD 2011-15 #447

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

javierps commented 1 year ago

Suspicious number of cases in northern tip. Drift in sd_w, but for the rest OK.

Suggest: investigate further, check spatial coverage of pixels in northern border. Consider dropping them.

eclee25 commented 1 year ago

Slight instability in sd_w but other diagnostics ok. High rates in Northern border cells likely due to sfrac.

Opinion: Temp Approve but rerun with higher sfrac_thresh_border

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

results look good.

Suggestion: accept.

eclee25 commented 1 year ago

sd_w traceplot doesn't seem converged until ˜250th iteration. 2011 estimate seems a little low due to multiple lower tfrac obs. Could also consider doing a longer warmup to see if sd_w convergence stabilizes for all sampling steps. Other diags look good.

Temp Approve - could consider removing some of the lower tfrac 2011 data to improve 2011 estimate

javierps commented 11 months ago

Sep 2023 production run: all OK.

Suggestion: accept.

eclee25 commented 11 months ago

Action Required @QLLZ Rerun cdr so Tab 6 shows imputed obs.

eclee25 commented 10 months ago

Imputed observations look good. Approve