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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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TGO 2016-20 #450

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

javierps commented 1 year ago

All OK.

Suggestion: accept.

eclee25 commented 1 year ago

Diagnostics ok with perhaps slightly elevated rate estimate in top right corner? Doesn't seem to affect TGO 2011 map though

Opinion: Approve

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

results look good.

Suggestion: accept.

eclee25 commented 1 year ago

Minimal subnat data in years with cases (2020). sd_w traceplots not stable until 250 iterations -- perhaps could use a longer warmup or try non-mixture sd_w prior.

Temp Approve - could consider minimal subnat model settings, longer warmup, or non-mixture sd_w prior

eclee25 commented 1 year ago

High sd_w, instability in the trace plots, little subnational data in 2020 which has the most cases. Try no-mixture sd_w prior settings.

QLLZ commented 1 year ago

Data pull, model run:

HASH: 05f598b95b5d42ac0049963f8a0b7e04d6f1dbd7

javierps commented 1 year ago

All OK.

Suggestion: Accept.

eclee25 commented 1 year ago

Approve