HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
1 stars 3 forks source link

TZA 2011-15 #451

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

javierps commented 1 year ago

On pixel with > 1e6 cases in the north, should be removed. Rest is ok.

Suggestion: Investigate further and re-run with higher sfrac.

eclee25 commented 1 year ago

Diagnostics ok but NE cell has high rate.

Opinion: Temp Approve and rerun with higher sfrac_thresh_border

QLLZ commented 11 months ago

Config

Data pull (80G):

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 11 months ago

Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 11 months ago

country data report

QLLZ commented 11 months ago

Not sure why table 6 has more than one annual observation for each year.

eclee25 commented 11 months ago

I think the OC 80 national annual estimates in Table 6 are different because they actually represent Zanzibar and I think we manually changed ZNZ to admin 0 in some places for plotting purposes -- (not sure how the cdr is pulling the admin level now). All diags look good. Approve

javierps commented 9 months ago

Sep 2023 Production run: all OK.

Suggestion: accept.

eclee25 commented 9 months ago

Table 6 is a mix of TZA Mainland and ZNZ. OCs 20398 and 20397 have large discrepancies relative to OC 80, which I believe should be a high quality data source.

Action Required @QLLZ : Audit OCs 20398 and 20397 to validate the observations in Tab 6

Rerun the cdr so we can see if there is a 2014 TZA Mainland imputed observation

We don't think imputation gets triggered if at least one of Mainland or ZNZ has an admin 0. Could change it so that ZNZ is no treated as admin 0 as one possible solution

QLLZ commented 8 months ago

Confirmed the two observations in OC 20398 and OC 20397. They are both cases reported in Zanzibar.

QLLZ commented 8 months ago

Based on the regenerated country data report, there's no 2014 TZA mainland imputed observation.

eclee25 commented 7 months ago

Rerun where Mainland and ZNZ are no longer admin 0 observations. Standard run settings