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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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UGA 2011-15 #453

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 10db6c83d6486774d3148785df24b3145f375bb2 config

QLLZ commented 1 year ago

reran the initial values data after the new updates on initial values HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Prestan report

Country data report

javierps commented 1 year ago

Highish rate in norther border.

Rest is ok.

Suggestion: either re-run with higher sfrac or accept.

eclee25 commented 1 year ago

All ok except high rates in N, W, and SE borders.

Opinion: Temp Approve but rerun with higher sfrac_thresh_border

QLLZ commented 12 months ago

Config

Data pull:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 12 months ago

Failed stan model run log file

QLLZ commented 11 months ago

Rerun on dev_u_combs_fix

HASH: e56580fa5ddab00293e31ff90139351f80ae3f6c

QLLZ commented 11 months ago

country data report

eclee25 commented 11 months ago

All diags look generally good but there was a small set of consecutive iterations with small sampling movement in at least one chain. Temp Approve - for someone to doubly verify

javierps commented 10 months ago

Sep 2023 Production run: all OK, very few observations with Rhat above thresh, all below 1.1.

Suggestion: accept.

eclee25 commented 10 months ago

Approve