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HopkinsIDD / cholera-mapping-pipeline

Formerly part of cholera-taxonomy. The map creation scripts, packages, and file structure
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ZWE 2016-20 #460

Open eclee25 opened 1 year ago

QLLZ commented 1 year ago

Data pull: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8 config

QLLZ commented 1 year ago

Model run: HASH: 6772ea9da4f43ddc3da11c494a573af2ca3dd3c8

QLLZ commented 1 year ago

Country data report

javierps commented 1 year ago

A little bit of autocorr in sd_w, rest OK

Suggestion: accept.

eclee25 commented 1 year ago

All ok except high rates in S border.

Opinion: Temp Approve and rerun with higher sfrac_thresh_border

QLLZ commented 1 year ago

Config

Data pull & Model run:

HASH: 211913e0eb7d570ed62c48bc1ae9ecd6671a6cbc

QLLZ commented 1 year ago

country data report

QLLZ commented 1 year ago

Modeled cases are slightly overestimated. Others look good.

Suggestion: if the overestimations look fine, accept.

eclee25 commented 1 year ago

Lots of full annual lower tfrac observations in 2017 and 2018 but they don't seem to draw the estimates down in this case (probably due to the prevalence of censored observations also pulling the estimates up)

Temp Approve - Could consider remove duplicate full annual observations but not critical in this case I think

javierps commented 1 year ago

Sep 2023 production run: all OK.

Suggestion: accept.

eclee25 commented 1 year ago

2019 is overestimated but I suppose it's because there was such a large outbreak in 2018? Temp Approve

Discussed --> Approve