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Hsu-Che-Wei / COPILOT

Single cell RNA-seq preprocessing tool for gene-by-cell matrices of UMI counts. It is recommended to use the raw spliced and unpliced counts matrices produced by scKB pipeline as the input of copilot.
MIT License
17 stars 10 forks source link

a fix for total.mtx case #3

Closed duocang closed 3 years ago

duocang commented 3 years ago

sf and uf are variables created for spliced and unspliced data, if total.mtx is true then they should not be there.

Also, options for cell quality correlation.

rm variables if no further need, to save ram.

duocang commented 3 years ago

forget to add cores arguments for parallel computing.