Hi, I am interested in the length filtering step in the PLASMe pathway. In the paper, it says that contigs that are not between 1Kb and 350Kb are filtered out (and I assumed no plasmid-calls would be made for these contigs). However, when I ran the tool, I saw that PLASMe was calling some contigs that were less than 1Kb as plasmids. I reviewed the PLASMe.py file to look for a length filtering step and I did not see one. Does the tool filter out contigs that are <1Kb or >350Kb?
Hi, I am interested in the length filtering step in the PLASMe pathway. In the paper, it says that contigs that are not between 1Kb and 350Kb are filtered out (and I assumed no plasmid-calls would be made for these contigs). However, when I ran the tool, I saw that PLASMe was calling some contigs that were less than 1Kb as plasmids. I reviewed the PLASMe.py file to look for a length filtering step and I did not see one. Does the tool filter out contigs that are <1Kb or >350Kb?