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HudsonAlpha / aRNAPipe

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Configuration files for SLURM? #11

Open galeadmn opened 6 years ago

galeadmn commented 6 years ago

Hello, Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right. Thanks.

blasseigne commented 6 years ago

Hello,

Unfortunately I'm not aware of anyone porting to SLURM.

If you pursue this, please let me know. We'd be happy to make the modified files available, or point people to your github repo, if you'd like to share.

Brittany N. Lasseigne, Ph.D. Senior Scientist, Myers Lab HudsonAlpha Institute for Biotechnology 601 Genome Way Huntsville, Alabama 35806 www.lasseigne.org

On Wed, May 16, 2018 at 1:48 PM, galeadmn notifications@github.com wrote:

Hello, Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right. Thanks.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/HudsonAlpha/aRNAPipe/issues/11, or mute the thread https://github.com/notifications/unsubscribe-auth/AGL5tkU0Bk4rOrTp1dH4VkSEwPwZajsSks5tzHR1gaJpZM4UB19u .

galeadmn commented 6 years ago

Thank you, Brittany.

If I am successful in getting aRNApipe to work with SLURM, I will happily share the file with you.

Cheers, Frank

From: Brittany N. Lasseigne, PhD notifications@github.com Sent: Friday, May 18, 2018 6:16 AM To: HudsonAlpha/aRNAPipe aRNAPipe@noreply.github.com Cc: galeadmn galeadmn@uw.edu; Author author@noreply.github.com Subject: Re: [HudsonAlpha/aRNAPipe] Configuration files for SLURM? (#11)

Hello,

Unfortunately I'm not aware of anyone porting to SLURM.

If you pursue this, please let me know. We'd be happy to make the modified files available, or point people to your github repo, if you'd like to share.

Brittany N. Lasseigne, Ph.D. Senior Scientist, Myers Lab HudsonAlpha Institute for Biotechnology 601 Genome Way Huntsville, Alabama 35806 www.lasseigne.orghttp://www.lasseigne.org

On Wed, May 16, 2018 at 1:48 PM, galeadmn notifications@github.com<mailto:notifications@github.com> wrote:

Hello, Has anyone ported the pipeline to the SLURM workload manager? If so, is the modified sys_OTHER.py file available? I am new to workload managers, and don't quite trust myself to get it right. Thanks.

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/HudsonAlpha/aRNAPipe/issues/11, or mute the thread https://github.com/notifications/unsubscribe-auth/AGL5tkU0Bk4rOrTp1dH4VkSEwPwZajsSks5tzHR1gaJpZM4UB19u .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHubhttps://github.com/HudsonAlpha/aRNAPipe/issues/11#issuecomment-390203344, or mute the threadhttps://github.com/notifications/unsubscribe-auth/AePh7wGfed3dpcOR4VWIeFb-SKLGD6pcks5tzsmQgaJpZM4UB19u.