Add an option to output plot tables.

[xiekunwhy]

Hi,

Would you please add an option to output plain text tables of those in html (including summary table and those for plots), it will be make others easy to incorporate TGSFilter into some pipeline.

Best, Kun

[HuiyangYu]

Thank you very much for your interest in TGSFilter. In the latest version ( not released) of the software, significant modifications have been made. Your suggestions will be incorporated into the new software release.

[xiekunwhy]

It is not easy to build from source. mkdir -p /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin g++ -L/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib --std=c++11 -g -O3 /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/src/TGSFilter.cpp -lhts -lz -lisal -ldeflate -pthread -fPIE -I/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/include -o /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin/tgsfilter /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(ec_base.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(ec_base.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(igzip.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(igzip.o): unable to initialize decompress status for section .debug_info /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a: error adding symbols: File format not recognized collect2: error: ld returned 1 exit status make: *** [/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin/tgsfilter] Error 1

[HuiyangYu]

This error is due to the difference of the gcc version between libisal.a under compiled lib and the current environment. These problems will be solved in the latest version. Does the pre-compiled binary program work? If so, you can download and start with the pre-compiled program.

---- Replied Message ---- | From | @.> | | Date | 08/06/2024 14:25 | | To | @.> | | Cc | Zou @.>@.> | | Subject | Re: [HuiyangYu/TGSFilter] Add an option to output plot tables. (Issue #1) |

It is not easy to build from source. mkdir -p /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin g++ -L/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib --std=c++11 -g -O3 /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/src/TGSFilter.cpp -lhts -lz -lisal -ldeflate -pthread -fPIE -I/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/include -o /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin/tgsfilter /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(ec_base.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(ec_base.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(igzip.o): unable to initialize decompress status for section .debug_info /usr/bin/ld: /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a(igzip.o): unable to initialize decompress status for section .debug_info /public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/lib/libisal.a: error adding symbols: File format not recognized collect2: error: ld returned 1 exit status make: *** [/public2/home/sl_qybio/sl_qybio/software/biosoft/TGSFilter/bin/tgsfilter] Error 1

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[xiekunwhy]

pre-compiled binary program is worked, but the newest version is v1.10, not v1.11.