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HullUni-bioinformatics / ReproPhylo

Reproducible Phylogenomics
http://hulluni-bioinformatics.github.io/ReproPhylo
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When the values in the OTU meta have spaces, raxml brakes #17

Closed szitenberg closed 9 years ago

szitenberg commented 10 years ago

For concat trees, add a qualifier 'numeric_identifier' and use it in the concatenated alignment. Once the tree is done, use ete to replace the numeric identifier with the OTU meta value.

szitenberg commented 9 years ago

When a concat object is added to the Project, the OTU meta is backed up as 'original otu meta', and then characters that break raxml or nexml are replaced by _ro_.