I continue to receive an "invalid cmg_in" error when I try to run the docker for skull stripping. Do you have recommendations/examples on how I should orient the volume to ensure they are matching the trained models or if there is a different issue occurring here? I am running the following in the terminal:
docker run --gpus all -v working_dir sandywangrest/deepbet muSkullStrip.py -in input_file -model Site-All-T-epoch_36_update_with_Site_6_plus_7-epoch_09.model
Hello,
I continue to receive an "invalid cmg_in" error when I try to run the docker for skull stripping. Do you have recommendations/examples on how I should orient the volume to ensure they are matching the trained models or if there is a different issue occurring here? I am running the following in the terminal:
docker run --gpus all -v working_dir sandywangrest/deepbet muSkullStrip.py -in input_file -model Site-All-T-epoch_36_update_with_Site_6_plus_7-epoch_09.model