HumanBrainProject / hbp-validation-framework

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Updating path of results related files having collab:// #275

Closed appukuttan-shailesh closed 4 years ago

appukuttan-shailesh commented 4 years ago

From here:

All "collab://" URLs should have been replaced by "https://collab-storage-redirect.brainsimulation.eu/"-style URLs during the migration.

and here:

I've fixed the first 10000, but there is a KG bug preventing me from changing the remaining 6000 or so. I've reported it, and I'll let you know when the remainder are fixed.

We still need to fix 517 entries. Here are their UUIDs (if useful):

['002bc9d6-8410-423f-8b8c-14a12cb4ed12',
 '003e41a4-00da-4270-9c2f-ccc3cc76f407',
 '00606695-a1d8-4cf8-8cbd-c96776436e6b',
 '009d2ae0-1609-41f6-957d-3939c72bed96',
 '01f348e5-8c5a-478b-b7c9-5c08d2d289b2',
 '0274b1ba-ebdc-4061-b6be-1abd95d15727',
 '03160dc7-a74b-4cf7-aa66-8f9c9ec3ae98',
 '0354e8cc-3b95-4337-ad48-cc86310e77ee',
 '03e3b74f-bb74-4884-96f7-cbd61f5ef42f',
 '03edbf1a-ccfd-43ca-a437-68e6463d7330',
 '04979dac-ce02-447b-a19c-4448010c811d',
 '04d895ed-ccc8-4b91-9609-6fb4fdbd6c9c',
 '061deef1-84fd-4ce7-8a3f-ce67c3e3e705',
 '06b682c0-e312-49f6-8a6b-82ee566c221d',
 '06ea3e26-2f61-4837-aa48-8d3dc302f70a',
 '06fad865-6ab1-45ce-8fce-e4e94d64897d',
 '076fcf1a-1974-45dc-89a3-9ab3879af719',
 '07770ce1-9f29-470d-b659-248a15e54db5',
 '07b890e7-d301-4fa6-b2d4-549aca1fa9d4',
 '07b8fb43-f655-4b32-808c-940649460af2',
 '07feccbf-0d9a-4ee6-a713-24b9e1f79552',
 '0864fcd2-8584-4902-b8d3-854ad90da8c7',
 '08b404ad-17cb-435a-bcf8-bb56a95a35e5',
 '0932c681-665c-4d20-891a-4fa14fc1223b',
 '099262f4-928f-4283-bdf8-f91a39534e04',
 '099eb2a2-0ded-4314-836d-c79702cbff4a',
 '09aeead8-0eac-4bff-a782-8e4d05189af0',
 '0a5b7459-73f9-465e-bb6a-cee6744d84e4',
 '0ab9c5c0-8957-4816-a0bb-ae8a4f8a7f16',
 '0b2f54dd-ca6f-4927-8301-c412cb2be713',
 '0b521a26-9f87-42a7-9c35-e431db1dcd72',
 '0bef2483-d4d1-4ccb-b862-810e0c0a39e5',
 '0c76c1dd-f115-4152-a580-d22ee48dbaba',
 '0cf06459-5333-4697-afd4-db5b2b4f7e7b',
 '0e015d0e-18af-41a7-ba62-0b9e768f3bb3',
 '0f650144-671d-4ed5-a461-a16db53c5780',
 '0f6641ce-8b8a-4b0d-b20f-5800494e64f7',
 '0f8b3018-c004-492d-a98f-2a4c8099865f',
 '0fe7597d-e2e2-4fac-bc3f-5ad04aac7e4c',
 '0ff57a2a-6a20-47a7-a1ac-e55af7eaa0d4',
 '108285e9-444c-46c6-9a70-286a8738415c',
 '10853d10-6a8a-4f21-a671-286bd1240220',
 '12a160bd-5852-4894-b86f-d9b666fa7a61',
 '12ae41aa-262d-4f63-a1ec-9ec6e17be007',
 '1309cae1-1853-4af3-8899-cc740a4cdb54',
 '1344c051-2ac2-4553-9425-2ad7f48d0db4',
 '137376f8-31c1-476f-8a6c-60232418607e',
 '13bdf57e-b68b-46ff-a927-4bd31de50688',
 '13cd7dc4-2dca-4baa-a96a-ac332bab39d1',
 '14c72c89-2355-4ade-8d78-cd6b3fb102d2',
 '16129de7-635b-47dc-8e7e-a6561b02469a',
 '1674f676-ff24-45b8-b790-c35ec462b3b1',
 '16c2c5e8-c37d-4a01-b544-3d8263aeb400',
 '179a46d0-304a-4847-b2a0-6efd770c7892',
 '1856b963-d8a8-4ed1-80d2-c20a4fe55d86',
 '18aef8f9-7ec4-43ab-b0a9-016f17dd4365',
 '18eac047-e9db-4a05-a198-b6ed07547888',
 '18f9b5c5-d963-43f3-812f-d06af4bac07f',
 '19b679e6-66b7-4175-a2f8-8bc36baac1b9',
 '1a2461c9-138e-4ae9-937e-20b590178f51',
 '1b3d8e8b-09fa-4a33-b02c-53e1e20fd9fd',
 '1c5b7cb0-899b-462b-856a-ca7a0b6b871f',
 '1c5d15fe-1470-4706-b5d7-3d273f0be4bf',
 '1c82a170-c56d-41bb-9dca-a01a3b1c373d',
 '1c8fef27-d7f2-4f77-9962-74105c5e821f',
 '1caebcbf-ba29-498a-ae89-a6723bdadd5d',
 '1cbbdb97-7cef-4b7f-a89e-fd9afefc9d17',
 '1cd17492-fe4a-432c-9343-5ad816a7feca',
 '1cd34652-029f-490e-a4cc-7e2e9fb3a235',
 '1cddbe31-cba0-47eb-94bb-aa4b34a61855',
 '1d597cb7-0bf7-4d64-b930-6280ed220ae7',
 '1da0ef47-1062-41b0-a417-4c9699fa6cd6',
 '1da8e4d5-aaef-4151-ad07-11446fa36130',
 '1de35cc5-f062-4c5a-949d-39e78c908b6a',
 '1e710745-0a63-4cb5-975e-cac94668bba6',
 '1eb0c8a5-89a7-434e-a11f-80bf0ab0788e',
 '1eec5c68-4f12-4c95-b0e6-89f0ec717d9e',
 '1f4fd212-d288-40e8-90fc-e3f3b970598e',
 '1facfa30-1383-4155-972b-fd7b36398e78',
 '21088aa4-70d3-4e8f-ac0c-1445a86b2668',
 '2134de0f-e347-4ba1-be5d-3181d448e974',
 '217af78d-cb4e-4ea4-8c40-eb7bc303b54b',
 '2180b5d6-bee7-4be1-b0cb-9599a1acbb8c',
 '21ac1695-0c73-44a2-81a9-5fd56ff864c7',
 '21b6d6cf-7733-489a-bc43-9c14a43b4678',
 '21eb11e0-7ce7-4301-9ae2-5fccc55d994a',
 '22a91814-29e1-4d38-a60c-ee034a098176',
 '23be39fa-54d1-4ead-924f-a53a9a258849',
 '23decd3c-16eb-488a-8c75-d53f5809f0f1',
 '24c96600-b104-49bc-9926-1072a11cb174',
 '24f06dc0-d727-431b-adbc-cf8358c57cde',
 '2580fb1e-7281-4d20-91ee-2e6f5812ea78',
 '25968b45-3f47-4495-ae78-11eed1b673b9',
 '26307838-9c5a-40d6-8a56-8dacd77f0e77',
 '26d0b9ae-5287-47a6-a6c6-e6907905b037',
 '27946a81-afe6-44d8-836a-0ba92cf92ba7',
 '281aced4-1800-496e-8bef-e23b6c597096',
 '28c3db6f-2897-4283-99e2-43223f5c5751',
 '2aac80ff-c31a-4234-af4d-f92f464751f7',
 '2ac7efd9-d57f-464e-ba51-3c19d5c57bcd',
 '2b8035a7-889e-4433-a2bd-a0c8717b41de',
 '2c37dfa0-f6a2-4ce5-9402-8b247115aa83',
 '2c99b85a-ef4f-4ca7-81dc-6b4053e5cf95',
 '2d59c245-fdae-405f-8f17-7201028cc6ce',
 '2dcae217-a8c5-4d89-b3d0-60a04b4748e4',
 '2e36a1a4-e087-4407-a00e-f146e6d073ea',
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 '2f61d1e6-7017-4737-80a5-dd92a4f5b244',
 '2f787db1-f609-4151-ab58-186ed204bb30',
 '2fc71da9-40ba-4293-8115-4bc28768e131',
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 'f8818199-e2ee-43b2-ad91-7b7e7fd10fad',
 'f8ff885d-d634-4afa-b9d5-2afced0d0655',
 'fa05da33-8348-4344-8c47-445e438bcd6c',
 'fa8cd2e4-513f-448a-81fc-6fa9c581ecb4',
 'fb151f4a-545f-42a4-aa11-90569aa7be07',
 'fbdc15d3-8b54-40c8-8427-bd55f2c1acb0',
 'fc826517-afb9-4632-a9f6-126d7bc305a7',
 'fd965bdf-da54-41d8-aa0a-b9d6f3a6a175',
 'fdc2f92c-ee15-4562-9a6a-6c26c9532153',
 'fdce4074-0e6c-44e7-b222-bb7bb88fc714',
 'fe2d56c8-45cd-478c-934e-86a7000b5bfa',
 'ff2c3746-d3d1-4a0f-ae74-579a8e4bb07c',
 'ff84b7b8-a3b4-4f6b-b59d-ff0f33eb5fb9',
 'fffbde77-6e1a-4aa5-9ffb-ac27fa844d6f']

Currently they still follow the "collab://" syntax. It would be helpful to have them changed to "https://collab-storage-redirect.brainsimulation.eu" (like others) to handle the moving of these data files to CSCS storage.

appukuttan-shailesh commented 4 years ago

@apdavison : Also some entries have a small type with the path containing and extra slash before the Collab ID, e.g.: https://collab-storage-redirect.brainsimulation.eu//8123/...

I was able to track down the following results with this typo: 0ce09898-9231-4131-9917-c21f6fb6982e 120ccec2-b23c-4b2b-8450-03c8326e3a79 590ddfa1-d106-4fcd-b416-5c9ae3393353 69065ae1-f455-4db5-9a58-8f46773d5ee0 bdefe366-6996-4021-ab65-8a1c4772f8a3

apdavison commented 4 years ago

I've fixed the ".eu//" cases

appukuttan-shailesh commented 4 years ago

All the Collab v1 related files have now been moved to CSCS storage (https://object.cscs.ch/v1/AUTH_c0a333ecf7c045809321ce9d9ecdfdea/hbp_vf_results_storage/CollabV1_storage/) and the results accordingly updated in KG. So this problem should now be resolved.