Project Completion QA Checklist: HDCA-Sweden-10x

HumanCellAtlas / data-operations

MIT License

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Project Completion QA Checklist: HDCA-Sweden-10x #2

Open jychien opened 5 years ago

jychien commented 5 years ago

Project UUID: 008e40e8-66ae-43bb-951c-c073a2fa6774 Project Title: HDCA project: single cell transcriptomics Project Short Name: HDCA-Sweden-10x Submission UUID: 071fc37f-1a01-4cf7-a6f5-2662c42c12b6 Environment: Production

"HDCA-Sweden-10x" needs to be re-ingested for re-bundling on the 10X data. Go through Project Completion QA Checklist prior to re-ingest into production.

[x] Process QA of primary bundles
[x] Metadata tsv validation: Run metadatatsv_validator.py

jahilton commented 5 years ago

Ran the validator script: The only error here was sequencing_files with format:fastq.gz when they should be fastq. Handled in https://github.com/HumanCellAtlas/hca-data-wrangling/issues/127

jychien commented 5 years ago

Process QA found the following issues:

Browser shows age of organism as 'Unspecified' and 'unknown' for fetal samples, even though there is a gestational age. This is up for discussion as to if/how this needs to be fixed in browser.

jychien commented 4 years ago

Has multiple sets of fastq files for each bundle, and is missing sequence_file.lane_index.